Variant report

Variant	rs28527257
Chromosome Location	chr14:104229315-104229316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr14:104229248-104229346	MCF10A-Er-Src	breast:	n/a	n/a
2	SPI1	chr14:104228943-104229350	HL-60	blood:	n/a	chr14:104229149-104229162
3	POLR2A	chr14:104228955-104229330	HL-60	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFYVE21-1	chr14:104229140-104229484	NONHSAT040219

Variant related genes	Relation type
ENSG00000270591	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10137566	0.86[AFR][1000 genomes]
rs10137630	1.00[AMR][1000 genomes]
rs10148880	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149209	1.00[AMR][1000 genomes]
rs28402277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28699186	0.89[AFR][1000 genomes]
rs59361269	1.00[AMR][1000 genomes]
rs9324067	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104196000-104268000	Weak transcription	Small Intestine	intestine
2	chr14:104200400-104231800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:104201000-104267600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:104203200-104267800	Weak transcription	Psoas Muscle	Psoas
5	chr14:104208800-104260000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:104209400-104264800	Weak transcription	Brain Substantia Nigra	brain
7	chr14:104211800-104265000	Weak transcription	Hela-S3	cervix
8	chr14:104215000-104256800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:104215400-104230200	Weak transcription	Adipose Nuclei	Adipose
10	chr14:104215400-104230800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:104215400-104248600	Weak transcription	Aorta	Aorta
12	chr14:104215400-104250000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:104215400-104263800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr14:104215400-104273200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:104216000-104242600	Weak transcription	Colonic Mucosa	Colon
16	chr14:104216000-104267600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:104216200-104259000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr14:104216200-104264400	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:104216200-104264600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:104216200-104267800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:104216200-104268800	Weak transcription	Brain Angular Gyrus	brain
22	chr14:104216400-104240600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr14:104216600-104238600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr14:104216600-104254800	Weak transcription	Brain Anterior Caudate	brain
25	chr14:104216600-104257200	Weak transcription	HepG2	liver
26	chr14:104216800-104230000	Weak transcription	Esophagus	oesophagus
27	chr14:104216800-104230200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr14:104216800-104240800	Weak transcription	Fetal Intestine Large	intestine
29	chr14:104216800-104243600	Weak transcription	Pancreas	Pancrea
30	chr14:104216800-104261400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr14:104218400-104277800	Weak transcription	Spleen	Spleen
32	chr14:104218600-104230000	Weak transcription	Right Ventricle	heart
33	chr14:104218600-104230200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr14:104218800-104233800	Weak transcription	Gastric	stomach
35	chr14:104218800-104238400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr14:104218800-104243800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr14:104218800-104270200	Weak transcription	Ovary	ovary
38	chr14:104219600-104250000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr14:104220200-104239200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:104220400-104233800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:104220400-104241600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr14:104220600-104230200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr14:104220600-104230400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:104220600-104237000	Weak transcription	Primary T cells from cord blood	blood
45	chr14:104220600-104246400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr14:104221200-104234000	Weak transcription	Stomach Mucosa	stomach
47	chr14:104223000-104230000	Weak transcription	Liver	Liver
48	chr14:104223000-104237000	Weak transcription	NHEK	skin
49	chr14:104223200-104230000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr14:104223200-104254600	Weak transcription	HMEC	breast

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