Variant report

Variant	rs28529034
Chromosome Location	chr7:106813528-106813529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106806204..106812770-chr7:106813358..106822449,17	MCF-7	breast:
2	chr7:106811171..106813600-chr7:106828376..106831350,2	MCF-7	breast:
3	chr7:106813445..106815184-chr7:106826013..106828805,2	K562	blood:
4	chr7:106812872..106815212-chr7:106848283..106850029,2	K562	blood:

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10234033	1.00[AMR][1000 genomes]
rs10245000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245564	1.00[AMR][1000 genomes]
rs10252653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28417602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28546089	1.00[AMR][1000 genomes]
rs28624391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106810600-106818200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr7:106810600-106836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:106810800-106814200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:106810800-106826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:106810800-106828200	Weak transcription	Esophagus	oesophagus
6	chr7:106810800-106836200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:106811000-106814400	Weak transcription	Fetal Stomach	stomach
8	chr7:106811000-106815000	Weak transcription	Colonic Mucosa	Colon
9	chr7:106811000-106820000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:106811000-106820200	Weak transcription	HSMM	muscle
11	chr7:106811000-106824200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:106811000-106826800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:106811000-106826800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:106811000-106828800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:106811200-106813600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:106811200-106813600	Enhancers	Brain Anterior Caudate	brain
17	chr7:106811200-106813600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr7:106811200-106814200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:106811200-106814200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:106811200-106815600	Weak transcription	Fetal Kidney	kidney
21	chr7:106811200-106817800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr7:106811200-106818800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr7:106811200-106819400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr7:106811200-106821600	Weak transcription	Thymus	Thymus
25	chr7:106811400-106813600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:106811400-106813600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:106811400-106813600	Enhancers	Primary B cells from cord blood	blood
28	chr7:106811400-106813600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr7:106811400-106813600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:106811400-106813800	Weak transcription	Brain Germinal Matrix	brain
31	chr7:106811400-106813800	Enhancers	Brain Substantia Nigra	brain
32	chr7:106811400-106814000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:106811400-106814400	Enhancers	Brain Cingulate Gyrus	brain
34	chr7:106811400-106814400	Weak transcription	Stomach Mucosa	stomach
35	chr7:106811400-106815600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:106811400-106815800	Enhancers	Liver	Liver
37	chr7:106811400-106815800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr7:106811400-106819800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:106811400-106819800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:106811400-106820000	Weak transcription	NH-A	brain
41	chr7:106811400-106820200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr7:106811400-106820200	Weak transcription	NHEK	skin
43	chr7:106811400-106820400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:106811400-106824800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:106811400-106825200	Weak transcription	Lung	lung
46	chr7:106811400-106825800	Weak transcription	NHLF	lung
47	chr7:106812000-106813600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:106812000-106813800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:106812000-106813800	Weak transcription	Fetal Heart	heart
50	chr7:106812000-106813800	Weak transcription	Rectal Smooth Muscle	rectum

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