Variant report

Variant	rs28529331
Chromosome Location	chr4:96022957-96022958
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11724729	0.84[EUR][1000 genomes]
rs11734284	1.00[EUR][1000 genomes]
rs11736371	0.94[EUR][1000 genomes]
rs11939744	0.94[EUR][1000 genomes]
rs12502687	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12505161	0.89[EUR][1000 genomes]
rs12506780	0.84[EUR][1000 genomes]
rs12510363	0.89[EUR][1000 genomes]
rs17023127	0.84[EUR][1000 genomes]
rs28666440	0.84[EUR][1000 genomes]
rs28830496	0.84[EUR][1000 genomes]
rs56351546	0.94[EUR][1000 genomes]
rs56738985	0.84[EUR][1000 genomes]
rs57903047	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59044097	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59241324	0.84[EUR][1000 genomes]
rs59564997	1.00[AFR][1000 genomes]
rs72874690	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv830011	chr4:95947560-96103934	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv966206	chr4:96019551-96023007	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96009600-96023600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:96014000-96026400	Weak transcription	Aorta	Aorta
3	chr4:96014200-96026400	Weak transcription	Psoas Muscle	Psoas
4	chr4:96016000-96025600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:96016000-96060600	Weak transcription	Thymus	Thymus
6	chr4:96016600-96025400	Weak transcription	Fetal Thymus	thymus
7	chr4:96016600-96054200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:96020800-96023000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:96022200-96027400	Enhancers	A549	lung
10	chr4:96022400-96023200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:96022400-96023200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:96022600-96023200	Weak transcription	Dnd41	blood
13	chr4:96022800-96025000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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