Variant report

Variant	rs28529641
Chromosome Location	chr4:174098784-174098785
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174058621..174060538-chr4:174097948..174100109,2	K562	blood:
2	chr4:174091292..174097320-chr4:174098048..174101316,8	K562	blood:
3	chr4:174088223..174092682-chr4:174092972..174099857,11	MCF-7	breast:
4	chr4:174098266..174101208-chr4:174151162..174153147,2	K562	blood:

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10022621	0.84[AFR][1000 genomes]
rs28455952	0.84[AFR][1000 genomes]
rs28665137	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793960	chr4:174090004-174102397	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1801469	chr4:174090004-174102397	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv1823585	chr4:174090209-174107537	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174091600-174113600	Weak transcription	Esophagus	oesophagus
2	chr4:174091800-174104000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:174092200-174098800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:174092200-174099000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:174092200-174099000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr4:174092400-174100400	Weak transcription	Hela-S3	cervix
7	chr4:174092600-174099200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:174092600-174099200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:174092600-174102400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:174092800-174099200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:174092800-174099400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:174092800-174100400	Weak transcription	NHEK	skin
13	chr4:174092800-174101000	Weak transcription	HSMM	muscle
14	chr4:174092800-174103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:174092800-174103600	Weak transcription	Aorta	Aorta
16	chr4:174092800-174106000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:174092800-174109000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:174093000-174102200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:174093600-174102400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:174093600-174109800	Weak transcription	Gastric	stomach
21	chr4:174093800-174105000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:174094200-174102800	Weak transcription	Brain Anterior Caudate	brain
23	chr4:174095000-174109400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:174095200-174098800	Enhancers	Thymus	Thymus
25	chr4:174095400-174102800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:174095800-174102200	Weak transcription	Primary T cells from cord blood	blood
27	chr4:174096000-174100200	Weak transcription	HUVEC	blood vessel
28	chr4:174096200-174100400	Weak transcription	Fetal Intestine Large	intestine
29	chr4:174096200-174100600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:174096200-174102000	Weak transcription	Fetal Intestine Small	intestine
31	chr4:174096200-174103200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:174096200-174111200	Weak transcription	Small Intestine	intestine
33	chr4:174096400-174101800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr4:174096600-174098800	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:174096800-174098800	Weak transcription	Spleen	Spleen
36	chr4:174096800-174099200	Enhancers	K562	blood
37	chr4:174096800-174102000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:174096800-174103800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr4:174097000-174100400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:174097200-174098800	Enhancers	GM12878-XiMat	blood
41	chr4:174097200-174099000	Enhancers	Dnd41	blood
42	chr4:174097400-174099000	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr4:174097600-174098800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr4:174097600-174101000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr4:174097800-174098800	Enhancers	Stomach Mucosa	stomach
46	chr4:174097800-174099000	Enhancers	Primary B cells from peripheral blood	blood
47	chr4:174098000-174099000	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr4:174098000-174099000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:174098000-174099200	Enhancers	Primary B cells from cord blood	blood
50	chr4:174098000-174104200	Enhancers	Monocytes-CD14+_RO01746	blood

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