Variant report

Variant	rs28529644
Chromosome Location	chr4:129283408-129283409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17013176	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013178	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28427407	1.00[AMR][1000 genomes]
rs28446393	1.00[AMR][1000 genomes]
rs28611216	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28753719	1.00[AMR][1000 genomes]
rs73846923	1.00[AMR][1000 genomes]
rs73846925	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129270600-129291800	Weak transcription	Aorta	Aorta
2	chr4:129275800-129283800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:129280400-129290400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:129281600-129285600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:129282400-129284800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:129282800-129283800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:129282800-129284600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:129283200-129284600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:129283200-129291600	Weak transcription	Fetal Heart	heart
10	chr4:129283200-129292000	Weak transcription	Osteobl	bone
11	chr4:129283400-129284400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:129283400-129284600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:129283400-129291600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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