Variant report

Variant	rs2852965
Chromosome Location	chr18:45276452-45276453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1579118	0.85[AFR][1000 genomes]
rs2653637	0.85[AFR][1000 genomes]
rs2653639	0.91[AFR][1000 genomes]
rs2653643	0.85[AFR][1000 genomes]
rs2852970	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45275000-45276600	Bivalent Enhancer	Fetal Brain Male	brain
2	chr18:45275600-45280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:45275600-45280800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr18:45276000-45280400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:45276000-45280800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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