Variant report

Variant	rs28531383
Chromosome Location	chr4:166388644-166388645
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166380861..166382670-chr4:166385942..166388896,2	MCF-7	breast:

rs_ID	r²[population]
rs17046508	0.83[AMR][1000 genomes]
rs17435706	0.83[AMR][1000 genomes]
rs28635415	0.83[AMR][1000 genomes]
rs28847750	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9991565	0.86[AFR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166380000-166388800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:166380200-166390200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:166381800-166391000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:166382800-166388800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:166382800-166391400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:166383000-166389800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:166383000-166391000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:166383200-166389000	Weak transcription	Ovary	ovary
9	chr4:166383200-166391400	Weak transcription	Fetal Lung	lung
10	chr4:166383600-166389000	Weak transcription	Fetal Stomach	stomach
11	chr4:166383800-166389800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:166384200-166389200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:166384200-166389400	Weak transcription	Brain Germinal Matrix	brain
14	chr4:166384200-166390200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:166384200-166391800	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:166384400-166389000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:166385800-166391400	Weak transcription	Pancreas	Pancrea
18	chr4:166386000-166389200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:166386000-166391600	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:166386000-166392600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:166386000-166393000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:166386400-166389000	Weak transcription	Brain Anterior Caudate	brain
23	chr4:166386400-166389000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr4:166386400-166394000	Weak transcription	Brain Substantia Nigra	brain
25	chr4:166386400-166414400	Weak transcription	Fetal Brain Male	brain
26	chr4:166387200-166391600	Strong transcription	HepG2	liver
27	chr4:166387400-166391400	Weak transcription	Brain Angular Gyrus	brain
28	chr4:166387800-166391800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr4:166388200-166397000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:166388400-166389000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:166388400-166390600	Strong transcription	Aorta	Aorta
32	chr4:166388400-166390800	Strong transcription	Fetal Intestine Large	intestine
33	chr4:166388400-166391600	Strong transcription	Fetal Brain Female	brain
34	chr4:166388400-166391800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:166388600-166392000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links