Variant report

Variant	rs2853179
Chromosome Location	chr8:105462047-105462048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2250601	0.82[ASN][1000 genomes]
rs2254738	0.88[ASN][1000 genomes]
rs2669431	0.88[ASN][1000 genomes]
rs2669433	0.91[ASN][1000 genomes]
rs2669434	0.86[ASN][1000 genomes]
rs2669435	0.90[ASN][1000 genomes]
rs2669436	0.88[ASN][1000 genomes]
rs2669438	0.82[ASN][1000 genomes]
rs2853167	0.82[ASN][1000 genomes]
rs2853168	0.82[ASN][1000 genomes]
rs2853174	0.86[ASN][1000 genomes]
rs2853175	0.90[ASN][1000 genomes]
rs2853176	0.87[ASN][1000 genomes]
rs2853178	0.88[ASN][1000 genomes]
rs2853180	0.94[ASN][1000 genomes]
rs7821992	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105455000-105462600	Weak transcription	Adipose Nuclei	Adipose
2	chr8:105461000-105462200	Genic enhancers	Liver	Liver
3	chr8:105461000-105462800	Enhancers	Fetal Intestine Large	intestine
4	chr8:105461800-105462200	Enhancers	Pancreas	Pancrea
5	chr8:105461800-105463200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:105461800-105471600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:105462000-105463200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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