Variant report

Variant	rs28532197
Chromosome Location	chr4:30906285-30906286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10010742	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30904000-30907600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:30904600-30907600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:30904800-30907800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:30905200-30907200	Enhancers	Fetal Intestine Large	intestine
5	chr4:30905200-30907800	Enhancers	Fetal Intestine Small	intestine
6	chr4:30905400-30906400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:30905600-30906800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr4:30905600-30907000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:30905600-30907000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:30905600-30907000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:30905800-30906400	Enhancers	Aorta	Aorta
12	chr4:30905800-30907400	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:30906000-30906800	Enhancers	Fetal Lung	lung
14	chr4:30906000-30907400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:30906000-30909000	Weak transcription	Hela-S3	cervix
16	chr4:30906200-30907000	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr4:30906200-30907800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:30906200-30907800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:30906200-30908000	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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