Variant report

Variant	rs28535039
Chromosome Location	chr4:111048679-111048680
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:111038300..111040255-chr4:111048601..111050961,2	K562	blood:
2	chr4:111047592..111049114-chr4:111057549..111059538,2	K562	blood:
3	chr4:111046771..111053341-chr4:111055463..111062117,9	K562	blood:
4	chr4:111047778..111050717-chr4:111115386..111117761,2	K562	blood:
5	chr4:111038152..111040255-chr4:111047210..111050101,2	K562	blood:

Variant related genes	Relation type
ENSG00000263940	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28606655	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111024200-111049800	Weak transcription	Fetal Stomach	stomach
2	chr4:111026000-111061000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:111026400-111049200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:111028600-111054000	Weak transcription	HepG2	liver
5	chr4:111029600-111054200	Weak transcription	Liver	Liver
6	chr4:111030000-111060800	Weak transcription	A549	lung
7	chr4:111030000-111093800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:111030000-111098800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:111031800-111066200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:111037600-111051400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:111038000-111051600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:111038200-111051600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:111038200-111056400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:111038600-111053000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:111040400-111066800	Weak transcription	Esophagus	oesophagus
16	chr4:111041200-111049600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:111041200-111056600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:111041400-111049200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:111041400-111049200	Weak transcription	Stomach Mucosa	stomach
20	chr4:111041400-111053600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:111041400-111059400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:111041800-111049200	Weak transcription	Fetal Intestine Small	intestine
23	chr4:111041800-111049600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr4:111041800-111051800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:111041800-111054200	Weak transcription	Dnd41	blood
26	chr4:111041800-111070600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:111042000-111080200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:111042000-111084200	Weak transcription	NHLF	lung
29	chr4:111042800-111065200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:111043400-111053800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:111043600-111054000	Weak transcription	Osteobl	bone
32	chr4:111043800-111049200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:111043800-111049600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:111044000-111049200	Weak transcription	NHEK	skin
35	chr4:111044000-111050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:111044200-111049200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:111044200-111055400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:111044600-111049400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:111044600-111053000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr4:111044800-111049200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:111045800-111049200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:111046200-111049200	Weak transcription	K562	blood
43	chr4:111047400-111049200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:111047400-111051800	Weak transcription	NH-A	brain
45	chr4:111048400-111054800	Weak transcription	Primary T cells from cord blood	blood

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