Variant report

Variant	rs28535098
Chromosome Location	chr4:160460832-160460833
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2707718	0.83[AFR][1000 genomes]
rs28831672	0.88[AFR][1000 genomes]
rs9996396	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160459000-160468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160459400-160461400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:160459400-160465200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:160459600-160462000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:160459600-160463600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:160460200-160461800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:160460200-160463400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:160460200-160463600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:160460200-160468800	Weak transcription	HSMM	muscle
10	chr4:160460400-160462200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:160460400-160463000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:160460400-160463600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:160460600-160463400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:160460600-160463800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:160460800-160461800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:160460800-160461800	Enhancers	Fetal Heart	heart
17	chr4:160460800-160462000	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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