Variant report

Variant	rs28535151
Chromosome Location	chr4:78980923-78980924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78980165..78981369-chr4:79437966..79439156,9	MCF-7	breast:
2	chr4:78980443..78981479-chr4:79437986..79438999,5	MCF-7	breast:
3	chr4:78980297..78981139-chr4:79092342..79093264,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10518184	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120261	0.82[AMR][1000 genomes]
rs1320086	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2055494	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36052736	0.80[AMR][1000 genomes]
rs4507385	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859905	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4859911	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010714	chr4:78742505-78991030	Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv516836	chr4:78748977-78981919	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv594704	chr4:78748977-78981919	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv461562	chr4:78757015-78981919	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv461563	chr4:78757015-78981919	Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv594705	chr4:78757015-78981919	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78977000-78981200	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr4:78977200-78981000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:78977200-78981000	Active TSS	Brain Angular Gyrus	brain
4	chr4:78977200-78981000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:78977200-78981000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr4:78977200-78981000	Active TSS	Right Ventricle	heart
7	chr4:78977200-78981000	Active TSS	A549	lung
8	chr4:78977200-78981200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:78977200-78981400	Active TSS	H9 Cell Line	embryonic stem cell
10	chr4:78977400-78981000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:78977400-78981000	Active TSS	HSMMtube	muscle
12	chr4:78977400-78981600	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr4:78977400-78982000	Active TSS	H1 Cell Line	embryonic stem cell
14	chr4:78977600-78981000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:78977600-78981000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:78977600-78981000	Active TSS	Fetal Intestine Large	intestine
17	chr4:78977600-78981000	Active TSS	Fetal Intestine Small	intestine
18	chr4:78977600-78981200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:78977600-78981200	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr4:78977600-78981200	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr4:78977600-78981600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:78977600-78981800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:78977800-78981000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr4:78977800-78981000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:78977800-78981000	Active TSS	Right Atrium	heart
26	chr4:78978000-78981000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:78978000-78981000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:78978000-78981000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:78978000-78981000	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr4:78978000-78981400	Active TSS	Fetal Kidney	kidney
31	chr4:78979000-78981000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:78979800-78981000	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr4:78979800-78981000	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr4:78979800-78981000	Active TSS	HMEC	breast
35	chr4:78979800-78981200	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr4:78979800-78981200	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr4:78980000-78981000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:78980000-78981000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:78980000-78981000	Active TSS	Primary T cells from cord blood	blood
40	chr4:78980000-78981000	Active TSS	Brain Anterior Caudate	brain
41	chr4:78980000-78981000	Bivalent/Poised TSS	Osteobl	bone
42	chr4:78980200-78981000	Active TSS	Brain Cingulate Gyrus	brain
43	chr4:78980200-78981000	Active TSS	HSMM	muscle
44	chr4:78980400-78981400	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr4:78980600-78981000	Bivalent Enhancer	Primary B cells from cord blood	blood
46	chr4:78980600-78981000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
47	chr4:78980600-78981000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
48	chr4:78980600-78981000	Active TSS	Adipose Nuclei	Adipose
49	chr4:78980600-78981000	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr4:78980600-78981000	Active TSS	Fetal Muscle Trunk	muscle

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