Variant report

Variant	rs2853550
Chromosome Location	chr2:113587121-113587122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113585135..113587533-chr2:113609223..113612199,2	K562	blood:
2	chr2:113586763..113589064-chr2:113590653..113592302,3	K562	blood:
3	chr2:113583953..113585780-chr2:113586794..113589509,2	K562	blood:
4	chr2:113582868..113585453-chr2:113586794..113589453,2	K562	blood:

Variant related genes	Relation type
ENSG00000180152	Chromatin interaction
ENSG00000125538	Chromatin interaction

rs_ID	r²[population]
rs1143642	0.91[EUR][1000 genomes]
rs3917365	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs3917374	0.88[EUR][1000 genomes]
rs3917375	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113582200-113588800	Weak transcription	Lung	lung
2	chr2:113582400-113592000	Weak transcription	NH-A	brain
3	chr2:113582800-113589400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:113583000-113587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:113583000-113592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:113583600-113587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:113583600-113587200	Weak transcription	HMEC	breast
8	chr2:113583600-113591200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:113583600-113592000	Weak transcription	Osteobl	bone
10	chr2:113585200-113587200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:113585400-113587400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:113585600-113587400	Enhancers	K562	blood
13	chr2:113586400-113588800	Genic enhancers	Primary hematopoietic stem cells	blood
14	chr2:113586600-113587600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:113586800-113588000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:113586800-113588200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr2:113586800-113588800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr2:113586800-113589000	Weak transcription	Pancreas	Pancrea
19	chr2:113587000-113587200	Enhancers	Fetal Intestine Small	intestine
20	chr2:113587000-113589000	Weak transcription	Primary B cells from cord blood	blood
21	chr2:113587000-113589000	Strong transcription	NHEK	skin
22	chr2:113587000-113589600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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