Variant report

Variant	rs28535753
Chromosome Location	chr4:101760479-101760480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1390933	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101758600-101761200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:101759200-101760600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:101759800-101765200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:101759800-101765200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:101760000-101765200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:101760200-101770000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:101760400-101761800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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