Variant report

Variant	rs28536010
Chromosome Location	chr15:93065266-93065267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93064431..93065465-chr15:93257828..93258686,4	MCF-7	breast:
2	chr15:93064930..93065584-chr15:93138463..93139251,2	MCF-7	breast:
3	chr15:93062742..93066323-chr15:93179954..93182328,3	MCF-7	breast:
4	chr15:93064493..93065462-chr15:93226412..93227313,4	K562	blood:
5	chr15:93064524..93065412-chr15:93257719..93258254,3	K562	blood:
6	chr15:93064480..93065790-chr15:93258050..93258792,4	MCF-7	breast:
7	chr15:93064747..93065909-chr15:93226356..93227224,4	MCF-7	breast:
8	chr15:93064927..93066555-chr15:93186642..93188513,2	MCF-7	breast:
9	chr15:93063927..93066248-chr15:93198569..93200828,2	MCF-7	breast:
10	chr15:93064485..93065451-chr15:93155056..93156204,3	MCF-7	breast:
11	chr15:93063433..93065397-chr15:93114357..93116387,2	K562	blood:
12	chr15:93064521..93065401-chr15:93226401..93227344,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction
ENSG00000258647	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11074076	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11634265	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11639422	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12441761	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28590417	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4572334	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6496948	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6496949	0.90[EUR][1000 genomes]
rs6496950	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6496951	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8033207	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8033371	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv2751542	chr15:93053681-93091815	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93059600-93066400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:93063200-93068000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr15:93063400-93066800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:93063400-93067200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:93063800-93065400	Enhancers	HUVEC	blood vessel
6	chr15:93064200-93067400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:93064400-93065400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:93064400-93065400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr15:93064400-93065600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:93065000-93065400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr15:93065000-93065400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:93065000-93065400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:93065000-93065400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr15:93065000-93065400	Enhancers	Brain Angular Gyrus	brain
15	chr15:93065000-93065400	Enhancers	Brain Cingulate Gyrus	brain
16	chr15:93065000-93065400	Enhancers	Brain Hippocampus Middle	brain
17	chr15:93065000-93065400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr15:93065000-93065400	Enhancers	A549	lung
19	chr15:93065000-93065600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr15:93065000-93065600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:93065000-93065600	Enhancers	Fetal Lung	lung
22	chr15:93065000-93065600	Enhancers	Rectal Smooth Muscle	rectum
23	chr15:93065000-93065600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr15:93065000-93065600	Enhancers	HSMM	muscle
25	chr15:93065000-93065800	Enhancers	Fetal Muscle Leg	muscle
26	chr15:93065200-93066200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:93065200-93067400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:93065200-93067400	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:93065200-93067600	Weak transcription	HSMMtube	muscle
30	chr15:93065200-93067800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:93065200-93070600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:93065200-93070600	Weak transcription	Right Ventricle	heart

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