Variant report

Variant	rs28537653
Chromosome Location	chr8:102993690-102993691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102989164..102991049-chr8:102992314..102994744,2	K562	blood:
2	chr8:102977498..102979940-chr8:102992806..102995177,2	K562	blood:
3	chr8:102984375..102986056-chr8:102991916..102994801,2	K562	blood:
4	chr8:102985923..102988021-chr8:102992100..102994018,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10094747	1.00[AFR][1000 genomes]
rs9656848	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102989800-102994800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr8:102990200-102996000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:102990400-102999400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102990400-103008000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:102991200-102994000	Enhancers	Rectal Smooth Muscle	rectum
6	chr8:102991200-102994400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:102991600-102993800	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:102991600-102996800	Weak transcription	K562	blood
9	chr8:102992400-103000400	Weak transcription	Fetal Brain Male	brain
10	chr8:102992600-102994000	Weak transcription	Aorta	Aorta
11	chr8:102992600-102996000	Weak transcription	Esophagus	oesophagus
12	chr8:102992600-102998400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr8:102992600-103005600	Weak transcription	Left Ventricle	heart
14	chr8:102992600-103007600	Weak transcription	Lung	lung
15	chr8:102992800-102996000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:102992800-102997000	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:102992800-102997000	Weak transcription	Psoas Muscle	Psoas
18	chr8:102992800-102998800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:102992800-103001200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr8:102993200-102994000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr8:102993200-102995400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr8:102993200-103004000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:102993200-103004200	Weak transcription	Ovary	ovary
24	chr8:102993200-103008400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr8:102993400-102994200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr8:102993400-102997000	Weak transcription	Fetal Heart	heart
27	chr8:102993600-102994000	Weak transcription	Right Ventricle	heart

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