Variant report

Variant	rs2853766
Chromosome Location	chr15:50548243-50548244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr15:50548098-50548502	K562	blood:	n/a	n/a
2	RCOR1	chr15:50548148-50549008	K562	blood:	n/a	n/a
3	GATA3	chr15:50548026-50549800	MCF-7	breast:	n/a	chr15:50549183-50549191 chr15:50549560-50549568
4	GATA3	chr15:50547943-50549854	MCF-7	breast:	n/a	chr15:50549183-50549191 chr15:50549560-50549568
5	ZNF217	chr15:50548200-50549042	MCF-7	breast:	n/a	n/a
6	EP300	chr15:50548196-50548925	K562	blood:	n/a	n/a
7	NR2F2	chr15:50548009-50549566	MCF-7	breast:	n/a	n/a
8	GATA3	chr15:50547800-50549361	MCF-7	breast:	n/a	chr15:50549183-50549191
9	MAFK	chr15:50548219-50549122	Hela-S3	cervix:	n/a	chr15:50548427-50548442
10	SRF	chr15:50548111-50549187	MCF-7	breast:	n/a	n/a
11	ELF1	chr15:50548175-50548933	MCF-7	breast:	n/a	chr15:50548554-50548567
12	MYC	chr15:50548191-50550698	Hela-S3	cervix:	n/a	chr15:50550092-50550102 chr15:50549870-50549881 chr15:50549871-50549880 chr15:50549870-50549880 chr15:50549872-50549879 chr15:50549871-50549881 chr15:50549871-50549880
13	HDAC2	chr15:50548214-50548962	MCF-7	breast:	n/a	n/a
14	MAX	chr15:50547915-50549072	MCF-7	breast:	n/a	n/a
15	TEAD4	chr15:50548079-50548926	K562	blood:	n/a	n/a
16	KAP1	chr15:50548125-50549290	HEK293	kidney:	n/a	n/a
17	GATA3	chr15:50548130-50549014	MCF-7	breast:	n/a	n/a
18	ELF1	chr15:50548079-50549102	MCF-7	breast:	n/a	chr15:50548554-50548567
19	FOSL2	chr15:50548097-50549658	MCF-7	breast:	n/a	n/a
20	GATA2	chr15:50548148-50548657	SH-SY5Y	brain:	n/a	n/a
21	NR2F2	chr15:50548028-50549332	MCF-7	breast:	n/a	n/a
22	MAFF	chr15:50548239-50548614	K562	blood:	n/a	chr15:50548425-50548443
23	CEBPB	chr15:50548134-50549034	MCF-7	breast:	n/a	n/a
24	MAX	chr15:50548186-50550776	Hela-S3	cervix:	n/a	chr15:50550092-50550102 chr15:50549870-50549881 chr15:50549871-50549880 chr15:50549870-50549880 chr15:50549872-50549879 chr15:50549871-50549881 chr15:50549871-50549880

No.	Distal block	Cell Line	Cell type
1	chr15:50533878..50537241-chr15:50547265..50550070,3	MCF-7	breast:
2	chr15:50547608..50550414-chr15:50649423..50651512,2	K562	blood:
3	chr15:50520136..50522623-chr15:50547396..50549245,2	MCF-7	breast:
4	chr15:50537515..50540113-chr15:50546589..50548323,2	MCF-7	breast:
5	chr15:50547893..50550558-chr15:50556837..50559575,2	MCF-7	breast:
6	chr15:50548174..50551950-chr15:50645157..50647767,3	MCF-7	breast:

Variant related genes	Relation type
HDC	TF binding region
ENSG00000244879	Chromatin interaction
ENSG00000140287	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000241175	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12440789	0.84[CEU][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs2238292	0.84[MEX][hapmap]
rs4502159	1.00[LWK][hapmap]
rs854150	0.81[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs854151	0.89[JPT][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs854159	0.94[GIH][hapmap]
rs854165	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50532400-50549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:50542400-50548400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:50544600-50549200	Weak transcription	HSMMtube	muscle
4	chr15:50546400-50548600	Enhancers	Hela-S3	cervix
5	chr15:50548000-50548800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:50548000-50549000	Enhancers	A549	lung
7	chr15:50548000-50551800	Enhancers	K562	blood
8	chr15:50548000-50555600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr15:50548200-50552800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:50548200-50555800	Enhancers	Primary hematopoietic stem cells	blood

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