Variant report
| Variant | rs28538197 |
|---|---|
| Chromosome Location | chr2:234481673-234481674 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:234475954..234478927-chr2:234479708..234482579,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10171805 | 1.00[AMR][1000 genomes] |
| rs10182818 | 1.00[AMR][1000 genomes] |
| rs13389374 | 1.00[AMR][1000 genomes] |
| rs13398912 | 1.00[AMR][1000 genomes] |
| rs56094972 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73121108 | 1.00[AMR][1000 genomes] |
| rs73123128 | 1.00[AMR][1000 genomes] |
| rs73123133 | 1.00[AMR][1000 genomes] |
| rs73123137 | 1.00[AMR][1000 genomes] |
| rs73123148 | 1.00[AMR][1000 genomes] |
| rs73123150 | 1.00[AMR][1000 genomes] |
| rs9287602 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529419 | chr2:234229606-234670426 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv876013 | chr2:234338227-234579915 | Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv428072 | chr2:234393609-234624769 | Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 4 | nsv519876 | chr2:234466843-234493048 | Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:234481200-234486200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
