Variant report

Variant	rs28540356
Chromosome Location	chr4:121079461-121079462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10000817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10004844	1.00[AMR][1000 genomes]
rs10014732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011279	1.00[AMR][1000 genomes]
rs28407118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28548800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28686919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28735493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72918131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72918143	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv1845528	chr4:121034480-121185834	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121068800-121084000	Weak transcription	Psoas Muscle	Psoas
2	chr4:121079000-121080000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:121079000-121080400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:121079000-121081200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:121079200-121079600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:121079400-121079800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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