Variant report

Variant	rs2854038
Chromosome Location	chr4:26493209-26493210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1799723	0.85[ASN][1000 genomes]
rs3020584	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6448456	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs915889	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762417	chr4:26491768-26576800	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26491400-26494600	Weak transcription	Right Atrium	heart
2	chr4:26492000-26495000	Weak transcription	Gastric	stomach
3	chr4:26492000-26504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:26492600-26493600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:26493000-26493600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:26493000-26493600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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