Variant report

Variant	rs28541379
Chromosome Location	chr4:110722505-110722506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110721548..110724346-chr4:110736767..110738481,2	MCF-7	breast:
2	chr4:110645601..110647789-chr4:110720633..110722746,2	K562	blood:

Variant related genes	Relation type
ENSG00000109534	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10012229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28503248	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62324938	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110721400-110723600	Active TSS	Liver	Liver
2	chr4:110721600-110723400	Active TSS	Fetal Intestine Large	intestine
3	chr4:110721600-110723400	Active TSS	Fetal Intestine Small	intestine
4	chr4:110721600-110723400	Active TSS	Right Atrium	heart
5	chr4:110721800-110722600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:110721800-110723400	Active TSS	Ovary	ovary
7	chr4:110721800-110723400	Active TSS	HepG2	liver
8	chr4:110722000-110723000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:110722200-110723200	Active TSS	Duodenum Mucosa	Duodenum
10	chr4:110722200-110723200	Active TSS	Fetal Kidney	kidney
11	chr4:110722200-110723200	Active TSS	Psoas Muscle	Psoas
12	chr4:110722200-110723200	Active TSS	Right Ventricle	heart
13	chr4:110722200-110723400	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr4:110722200-110723400	Active TSS	Adipose Nuclei	Adipose
15	chr4:110722200-110723400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr4:110722400-110722600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:110722400-110722600	Enhancers	Pancreas	Pancrea
18	chr4:110722400-110722800	Active TSS	Brain Hippocampus Middle	brain
19	chr4:110722400-110722800	Active TSS	Fetal Lung	lung
20	chr4:110722400-110722800	Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr4:110722400-110722800	Active TSS	NHLF	lung
22	chr4:110722400-110723000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:110722400-110723200	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr4:110722400-110723400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:110722400-110723400	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr4:110722400-110723400	Flanking Active TSS	HUVEC	blood vessel
27	chr4:110722400-110723800	Enhancers	Osteobl	bone
28	chr4:110722400-110724000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:110722400-110724400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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