Variant report

Variant	rs28541457
Chromosome Location	chr4:95673067-95673068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95671224..95673662-chr4:95677934..95679824,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138696	Chromatin interaction
ENSG00000249599	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10033579	0.84[EUR][1000 genomes]
rs10033635	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10033774	0.84[EUR][1000 genomes]
rs1055221	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097437	0.84[EUR][1000 genomes]
rs11946187	0.83[EUR][1000 genomes]
rs11946251	0.84[EUR][1000 genomes]
rs1509618	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1553745	0.81[AMR][1000 genomes]
rs28393439	0.84[EUR][1000 genomes]
rs28401681	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28578077	0.84[EUR][1000 genomes]
rs2865373	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2902990	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4699340	0.83[AMR][1000 genomes]
rs4699352	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699624	0.83[EUR][1000 genomes]
rs6858833	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7663879	0.82[EUR][1000 genomes]
rs7681088	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7695770	0.84[AMR][1000 genomes]
rs9631726	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95672200-95675000	Weak transcription	A549	lung

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