Variant report

Variant	rs28545688
Chromosome Location	chr5:120814427-120814428
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10036021	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10036090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10036095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10037570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10037571	0.86[AFR][1000 genomes]
rs10037592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10037660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10040626	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17147878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6861264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6876219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6876623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6877028	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6879719	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33642	chr5:120380525-120848760	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023679	chr5:120689805-120890257	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv882803	chr5:120722413-120873947	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882805	chr5:120732139-120818132	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882806	chr5:120741900-120917249	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882807	chr5:120758647-120873947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv882808	chr5:120776767-120818132	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv981028	chr5:120809278-120817237	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120813000-120815600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr5:120813400-120815600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:120813600-120815400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:120813600-120815800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:120813800-120814600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:120814200-120814600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr5:120814400-120814600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:120814400-120814800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:120814400-120815000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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