Variant report

Variant	rs28548787
Chromosome Location	chr3:60837251-60837252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11130789	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1447915	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447919	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1882897	0.98[EUR][1000 genomes]
rs2594134	0.96[EUR][1000 genomes]
rs2594135	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2736747	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2736754	0.95[EUR][1000 genomes]
rs2736755	0.92[EUR][1000 genomes]
rs2736756	0.97[EUR][1000 genomes]
rs2736758	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66782740	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60833800-60839800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:60836600-60837800	Weak transcription	Aorta	Aorta
3	chr3:60836600-60839000	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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