Variant report

Variant	rs28548829
Chromosome Location	chr8:95178409-95178410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr8:95176505-95179658	SK-N-SH	brain:	n/a	chr8:95176919-95176926

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95173595..95177551-chr8:95177844..95181595,4	MCF-7	breast:

Variant related genes	Relation type
CDH17	TF binding region
ENSG00000079112	Chromatin interaction

rs_ID	r²[population]
rs10091496	1.00[AMR][1000 genomes]
rs11985194	1.00[AMR][1000 genomes]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95140800-95187000	Weak transcription	Small Intestine	intestine
2	chr8:95164200-95183400	Weak transcription	Aorta	Aorta
3	chr8:95170200-95190400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr8:95173600-95185000	Weak transcription	Colonic Mucosa	Colon
5	chr8:95176200-95178800	Enhancers	Fetal Stomach	stomach
6	chr8:95176200-95179000	Weak transcription	HMEC	breast
7	chr8:95176400-95178600	Enhancers	NHDF-Ad	bronchial
8	chr8:95176400-95178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:95176600-95178600	Genic enhancers	Fetal Intestine Small	intestine
10	chr8:95177000-95179200	Genic enhancers	Duodenum Mucosa	Duodenum
11	chr8:95177400-95178600	Enhancers	HSMMtube	muscle
12	chr8:95177400-95181000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:95177400-95181000	Weak transcription	Adipose Nuclei	Adipose
14	chr8:95177400-95181800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:95177600-95178600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:95177600-95179200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:95177800-95180800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:95177800-95181000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:95177800-95181400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:95177800-95183000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:95177800-95183200	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr8:95177800-95183600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:95177800-95188400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:95177800-95190000	Strong transcription	Fetal Intestine Large	intestine
25	chr8:95178000-95179200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:95178200-95179000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr8:95178200-95179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr8:95178400-95180800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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