Variant report

Variant	rs28549829
Chromosome Location	chr4:21249933-21249934
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1156764	0.84[EUR][1000 genomes]
rs11938789	0.90[EUR][1000 genomes]
rs11942862	0.83[EUR][1000 genomes]
rs12639844	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1364837	0.82[EUR][1000 genomes]
rs1425332	0.89[EUR][1000 genomes]
rs1425335	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16870715	0.81[ASN][1000 genomes]
rs1863290	0.84[EUR][1000 genomes]
rs6448037	0.84[EUR][1000 genomes]
rs6448038	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6842655	0.89[EUR][1000 genomes]
rs7657718	0.81[EUR][1000 genomes]
rs7672506	0.90[EUR][1000 genomes]
rs7679197	0.89[EUR][1000 genomes]
rs7679226	0.89[EUR][1000 genomes]
rs7679871	0.80[EUR][1000 genomes]
rs7687837	0.84[EUR][1000 genomes]
rs9291424	0.89[EUR][1000 genomes]
rs929961	0.84[EUR][1000 genomes]
rs964613	0.89[EUR][1000 genomes]
rs9994604	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002610	chr4:21192993-21261812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3341246	chr4:21248279-21250827	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3375777	chr4:21248454-21250627	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3468310	chr4:21248954-21250252	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3468311	chr4:21248954-21250252	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21249800-21250200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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