Variant report

Variant	rs28549973
Chromosome Location	chr8:60876183-60876184
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10092985	1.00[AFR][1000 genomes]
rs10096283	1.00[AFR][1000 genomes]
rs28613620	1.00[AFR][1000 genomes]
rs28679292	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60871600-60884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:60875400-60876600	Enhancers	Fetal Heart	heart
3	chr8:60875800-60876200	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr8:60875800-60877400	Enhancers	Primary B cells from peripheral blood	blood
5	chr8:60876000-60876400	Enhancers	Stomach Smooth Muscle	stomach
6	chr8:60876000-60876400	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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