Variant report

Variant	rs28550208
Chromosome Location	chr15:50149576-50149577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50148243..50150121-chr15:50151281..50153807,2	K562	blood:
2	chr15:50147995..50150192-chr15:50150286..50152318,2	MCF-7	breast:
3	chr15:50144065..50146550-chr15:50148452..50150273,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10519242	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1059850	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1059851	0.81[EUR][1000 genomes]
rs1059852	0.81[EUR][1000 genomes]
rs11070733	0.83[ASN][1000 genomes]
rs11630021	0.81[AMR][1000 genomes]
rs11633465	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633470	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633571	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185124	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12372951	0.86[EUR][1000 genomes]
rs12909447	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915207	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13329598	0.83[AMR][1000 genomes]
rs16962994	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962999	0.83[ASN][1000 genomes]
rs17486663	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28706888	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34404202	0.80[EUR][1000 genomes]
rs4275793	0.81[EUR][1000 genomes]
rs4347574	0.82[AMR][1000 genomes]
rs4494482	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4494483	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544192	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493383	0.83[ASN][1000 genomes]
rs7170482	0.83[ASN][1000 genomes]
rs7172585	0.83[ASN][1000 genomes]
rs7497350	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8038434	0.83[ASN][1000 genomes]
rs8041979	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8042458	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50135200-50181400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:50135800-50187400	Weak transcription	Liver	Liver
3	chr15:50138200-50189800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:50140200-50155600	Weak transcription	Ovary	ovary
5	chr15:50141200-50151600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:50141400-50151200	Weak transcription	HSMM	muscle
7	chr15:50144400-50159800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:50145600-50200400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:50146400-50151600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:50146400-50160000	Strong transcription	Primary hematopoietic stem cells	blood
11	chr15:50146600-50149600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:50147200-50149600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:50147200-50158400	Enhancers	NHDF-Ad	bronchial
14	chr15:50147400-50150400	Enhancers	NHLF	lung
15	chr15:50147400-50153400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:50147400-50153400	Enhancers	Osteobl	bone
17	chr15:50147600-50149800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:50148600-50149600	Flanking Active TSS	A549	lung
19	chr15:50148800-50149600	Enhancers	Fetal Muscle Leg	muscle
20	chr15:50148800-50149600	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr15:50148800-50150200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:50148800-50151000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:50149200-50149600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:50149200-50150000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:50149200-50151600	Weak transcription	Adipose Nuclei	Adipose
26	chr15:50149200-50152200	Weak transcription	Fetal Stomach	stomach
27	chr15:50149400-50149600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:50149400-50149600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr15:50149400-50149600	Flanking Active TSS	Hela-S3	cervix
30	chr15:50149400-50150000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr15:50149400-50151200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:50149400-50155400	Weak transcription	Placenta	Placenta
33	chr15:50149400-50198000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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