Variant report

Variant	rs28550710
Chromosome Location	chr8:54522370-54522371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10112441	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10808882	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10958375	0.81[EUR][1000 genomes]
rs10958376	0.87[EUR][1000 genomes]
rs10958377	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10958378	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10958379	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10958380	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10958386	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11778297	0.87[EUR][1000 genomes]
rs11779176	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11779309	0.81[EUR][1000 genomes]
rs11779641	0.81[EUR][1000 genomes]
rs11785377	0.81[EUR][1000 genomes]
rs11785465	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11785489	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11987300	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11995715	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12549885	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12550388	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13249182	0.87[EUR][1000 genomes]
rs13249232	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13250079	0.81[EUR][1000 genomes]
rs13251373	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13253006	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13259310	0.81[EUR][1000 genomes]
rs13260243	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13274248	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13275215	0.85[EUR][1000 genomes]
rs1382123	0.81[EUR][1000 genomes]
rs1477960	0.81[EUR][1000 genomes]
rs1477964	0.81[EUR][1000 genomes]
rs1477965	0.81[EUR][1000 genomes]
rs1551910	0.81[EUR][1000 genomes]
rs1551911	0.81[EUR][1000 genomes]
rs1551913	0.81[EUR][1000 genomes]
rs2035197	0.81[EUR][1000 genomes]
rs2086071	0.81[EUR][1000 genomes]
rs2086072	0.83[EUR][1000 genomes]
rs2086073	0.81[EUR][1000 genomes]
rs2086074	0.81[EUR][1000 genomes]
rs2086075	0.81[EUR][1000 genomes]
rs2169693	0.81[EUR][1000 genomes]
rs28376752	0.89[EUR][1000 genomes]
rs28521998	0.81[EUR][1000 genomes]
rs3919868	0.81[EUR][1000 genomes]
rs3940882	0.81[EUR][1000 genomes]
rs4258030	0.81[EUR][1000 genomes]
rs4531078	0.81[EUR][1000 genomes]
rs4873261	0.81[EUR][1000 genomes]
rs4873759	0.81[EUR][1000 genomes]
rs6415668	0.81[EUR][1000 genomes]
rs6415669	0.87[EUR][1000 genomes]
rs6415672	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6415673	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6415674	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6415675	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6473856	0.80[EUR][1000 genomes]
rs6473860	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473861	0.87[EUR][1000 genomes]
rs6473862	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473863	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473864	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473865	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473866	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6473867	0.87[EUR][1000 genomes]
rs6473868	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6473869	0.86[EUR][1000 genomes]
rs6473870	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6473871	0.85[EUR][1000 genomes]
rs6473872	0.86[EUR][1000 genomes]
rs6473875	0.86[EUR][1000 genomes]
rs6473876	0.85[EUR][1000 genomes]
rs66931312	0.87[EUR][1000 genomes]
rs6989219	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6989676	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6990694	0.87[EUR][1000 genomes]
rs6991825	0.81[EUR][1000 genomes]
rs6996204	0.81[EUR][1000 genomes]
rs7008144	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7009049	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7010314	0.86[EUR][1000 genomes]
rs7386224	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7387992	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7388189	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7388300	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7388337	0.86[EUR][1000 genomes]
rs7459503	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7459559	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7459598	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7460037	0.87[EUR][1000 genomes]
rs7460923	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7460945	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7461003	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7461174	0.87[EUR][1000 genomes]
rs7461405	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7461954	0.81[EUR][1000 genomes]
rs7462195	0.86[EUR][1000 genomes]
rs7462220	0.86[EUR][1000 genomes]
rs7462612	0.85[EUR][1000 genomes]
rs7462827	0.86[EUR][1000 genomes]
rs7462881	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7463378	0.87[EUR][1000 genomes]
rs7463478	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7463499	0.82[EUR][1000 genomes]
rs7463519	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7464824	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7465481	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7465505	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7465593	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7465617	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7465670	0.87[EUR][1000 genomes]
rs7820396	0.86[EUR][1000 genomes]
rs7825736	0.81[EUR][1000 genomes]
rs9643813	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9643814	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs978138	0.81[EUR][1000 genomes]
rs978139	0.81[EUR][1000 genomes]
rs978140	0.81[EUR][1000 genomes]
rs979361	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813750	chr8:54471135-54528984	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv15341	chr8:54510310-54529246	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
5	esv1813772	chr8:54520350-54540531	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1830188	chr8:54520350-54601462	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv890919	chr8:54521248-54607336	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	esv1812048	chr8:54521590-54529129	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
9	esv1807819	chr8:54521863-54528984	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54522000-54522400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:54522000-54522400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr8:54522000-54522400	Enhancers	NHEK	skin
4	chr8:54522000-54522600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr8:54522000-54522600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr8:54522000-54522600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr8:54522000-54522600	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr8:54522000-54522600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:54522000-54522600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:54522000-54522600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:54522000-54522800	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr8:54522000-54523000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr8:54522200-54522400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:54522200-54522600	Active TSS	H1 Cell Line	embryonic stem cell
15	chr8:54522200-54522600	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr8:54522200-54522600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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