Variant report

Variant	rs28550944
Chromosome Location	chr4:59862247-59862248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10010808	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10026859	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13103557	0.90[AFR][1000 genomes]
rs13112623	0.93[AFR][1000 genomes]
rs13117715	0.95[AFR][1000 genomes]
rs13126476	0.93[AFR][1000 genomes]
rs13133757	0.92[AFR][1000 genomes]
rs13140623	0.96[AFR][1000 genomes]
rs17089350	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28375683	0.93[AFR][1000 genomes]
rs28438595	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28572466	0.82[EUR][1000 genomes]
rs28753828	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73819924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9994765	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879031	chr4:59434110-59915131	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3446251	chr4:59622409-59949840	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2752957	chr4:59655302-59923634	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1000048	chr4:59709475-59889707	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59861200-59867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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