Variant report

Variant	rs28553911
Chromosome Location	chr15:45362227-45362228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:45362023-45362753	Hela-S3	cervix:	n/a	n/a
2	JUND	chr15:45361890-45362276	HepG2	liver:	n/a	n/a
3	SP1	chr15:45361882-45362326	HepG2	liver:	n/a	n/a
4	FOSL2	chr15:45361899-45362315	HepG2	liver:	n/a	n/a
5	POLR2A	chr15:45362072-45362440	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
SORD	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10152499	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
4	esv2757599	chr15:45100852-45383620	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv427961	chr15:45338381-45491634	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45316600-45366600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:45319200-45363200	Weak transcription	Fetal Thymus	thymus
3	chr15:45319800-45363600	Weak transcription	Brain Angular Gyrus	brain
4	chr15:45329800-45365800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:45331400-45369600	Weak transcription	Pancreas	Pancrea
6	chr15:45337400-45365400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:45338000-45363800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:45338400-45365200	Weak transcription	HSMM	muscle
9	chr15:45341200-45363600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:45341400-45362800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:45341600-45365800	Weak transcription	Fetal Lung	lung
12	chr15:45341800-45363000	Weak transcription	Gastric	stomach
13	chr15:45341800-45363200	Weak transcription	Brain Substantia Nigra	brain
14	chr15:45341800-45366600	Weak transcription	Thymus	Thymus
15	chr15:45342000-45362400	Weak transcription	Fetal Brain Male	brain
16	chr15:45342800-45363200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:45343200-45363400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:45345000-45374800	Weak transcription	Aorta	Aorta
19	chr15:45345400-45369400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:45345600-45364800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:45348400-45363200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:45350600-45366400	Weak transcription	A549	lung
23	chr15:45351000-45363400	Weak transcription	Brain Anterior Caudate	brain
24	chr15:45351000-45363600	Weak transcription	Primary B cells from cord blood	blood
25	chr15:45351200-45363200	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:45352000-45366400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:45352000-45369800	Weak transcription	Lung	lung
28	chr15:45352200-45363200	Weak transcription	Adipose Nuclei	Adipose
29	chr15:45353600-45362600	Weak transcription	Spleen	Spleen
30	chr15:45353600-45364400	Weak transcription	GM12878-XiMat	blood
31	chr15:45353600-45365200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr15:45353600-45365600	Weak transcription	Small Intestine	intestine
33	chr15:45354200-45363000	Weak transcription	Primary T cells from cord blood	blood
34	chr15:45354200-45363200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:45354400-45363400	Weak transcription	Brain Germinal Matrix	brain
36	chr15:45354600-45363000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr15:45354800-45365400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:45354800-45370400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:45355000-45364800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:45356600-45363800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr15:45356800-45363200	Strong transcription	Liver	Liver
42	chr15:45356800-45363400	Weak transcription	HSMMtube	muscle
43	chr15:45357000-45365200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:45357600-45364000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:45357800-45363600	Strong transcription	Fetal Stomach	stomach
46	chr15:45357800-45364800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:45358000-45362400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:45359800-45362400	Strong transcription	HepG2	liver
49	chr15:45359800-45364000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:45360000-45363800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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