Variant report

Variant	rs2855477
Chromosome Location	chr16:31144824-31144825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30993343..30997625-chr16:31144805..31148510,3	MCF-7	breast:
2	chr16:31141772..31145245-chr16:31195885..31201101,4	MCF-7	breast:
3	chr16:31144485..31148429-chr16:31189146..31193121,7	MCF-7	breast:
4	chr16:31122068..31124532-chr16:31144469..31146009,2	K562	blood:
5	chr16:31008270..31010066-chr16:31143240..31146039,2	MCF-7	breast:
6	chr16:31144729..31147101-chr16:31468783..31472042,3	MCF-7	breast:
7	chr16:31083033..31088054-chr16:31143674..31155673,17	MCF-7	breast:
8	chr16:31139340..31148115-chr16:31189133..31193213,16	MCF-7	breast:
9	chr16:31118494..31122515-chr16:31143591..31148259,6	MCF-7	breast:
10	chr16:31144726..31146548-chr16:31190461..31192886,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KAT8-2	chr16:31144694-31145331	ucscGeneNc_uc002ebp_1

No data

Variant related genes	Relation type
ENSG00000167395	Chromatin interaction
ENSG00000167394	Chromatin interaction
ENSG00000252809	Chromatin interaction
ENSG00000140691	Chromatin interaction
ENSG00000103507	Chromatin interaction
ENSG00000268863	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000099365	Chromatin interaction
ENSG00000260267	Chromatin interaction
ENSG00000099377	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17882368	1.00[MEX][hapmap]
rs7187220	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
4	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
5	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
6	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
7	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
8	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
9	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
10	nsv905740	chr16:31066249-31232437	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
11	nsv905741	chr16:31066249-31247924	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
12	nsv905742	chr16:31102321-31247924	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	188 gene(s)	inside rSNPs	diseases
13	nsv542900	chr16:31137352-31197027	Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31130400-31145000	Strong transcription	Fetal Brain Female	brain
2	chr16:31130400-31153000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr16:31130600-31145000	Weak transcription	Fetal Heart	heart
4	chr16:31130600-31145200	Strong transcription	Fetal Stomach	stomach
5	chr16:31130800-31145000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr16:31132400-31145800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:31132400-31146000	Weak transcription	Hela-S3	cervix
8	chr16:31133800-31146200	Weak transcription	Fetal Brain Male	brain
9	chr16:31134000-31145600	Weak transcription	Fetal Kidney	kidney
10	chr16:31135800-31153000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr16:31138200-31145200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr16:31139000-31145000	Genic enhancers	Placenta	Placenta
13	chr16:31139400-31145200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr16:31139400-31153200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr16:31139600-31145000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr16:31139600-31145000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr16:31140200-31145400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:31140200-31145600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr16:31140400-31152800	Weak transcription	GM12878-XiMat	blood
20	chr16:31140600-31145000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr16:31141000-31145000	Genic enhancers	NHEK	skin
22	chr16:31141000-31145800	Weak transcription	Right Atrium	heart
23	chr16:31141200-31145000	Genic enhancers	Placenta Amnion	Placenta Amnion
24	chr16:31141200-31145200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr16:31141200-31145600	Weak transcription	NH-A	brain
26	chr16:31141400-31145000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr16:31141400-31145200	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr16:31141400-31145200	Strong transcription	Fetal Muscle Leg	muscle
29	chr16:31141400-31145200	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr16:31141400-31145200	Strong transcription	Stomach Smooth Muscle	stomach
31	chr16:31141400-31145200	Weak transcription	Osteobl	bone
32	chr16:31141400-31145400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr16:31141400-31145600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr16:31141400-31149600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr16:31141400-31149800	Weak transcription	HSMMtube	muscle
36	chr16:31141600-31145200	Genic enhancers	H1 Cell Line	embryonic stem cell
37	chr16:31141800-31149800	Weak transcription	HSMM	muscle
38	chr16:31142000-31145000	Strong transcription	Brain Hippocampus Middle	brain
39	chr16:31142000-31145200	Genic enhancers	HMEC	breast
40	chr16:31142000-31145400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr16:31142200-31145000	Weak transcription	Fetal Lung	lung
42	chr16:31142200-31145600	Weak transcription	Small Intestine	intestine
43	chr16:31142200-31153200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr16:31142600-31145000	Genic enhancers	Pancreas	Pancrea
45	chr16:31142600-31145400	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
46	chr16:31142600-31145600	Transcr. at gene 5' and 3'	Esophagus	oesophagus
47	chr16:31142800-31145400	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
48	chr16:31142800-31145400	Weak transcription	HepG2	liver
49	chr16:31142800-31150200	Weak transcription	Psoas Muscle	Psoas
50	chr16:31143000-31153200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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