Variant report
| Variant | rs285554 |
|---|---|
| Chromosome Location | chr12:41928237-41928238 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs169564 | 1.00[EUR][1000 genomes] |
| rs2446145 | 0.83[EUR][1000 genomes] |
| rs2468312 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2599254 | 1.00[EUR][1000 genomes] |
| rs2608698 | 0.83[EUR][1000 genomes] |
| rs2608699 | 0.83[EUR][1000 genomes] |
| rs2608713 | 0.83[EUR][1000 genomes] |
| rs2608717 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2730812 | 1.00[EUR][1000 genomes] |
| rs2730815 | 0.83[EUR][1000 genomes] |
| rs2730825 | 0.83[EUR][1000 genomes] |
| rs2730831 | 1.00[EUR][1000 genomes] |
| rs2730832 | 1.00[EUR][1000 genomes] |
| rs2733288 | 0.83[EUR][1000 genomes] |
| rs285551 | 1.00[EUR][1000 genomes] |
| rs285552 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs285553 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs285558 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs285559 | 0.99[EUR][1000 genomes] |
| rs285570 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285571 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285572 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285573 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285576 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs285588 | 1.00[EUR][1000 genomes] |
| rs285589 | 0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs285591 | 0.83[EUR][1000 genomes] |
| rs285594 | 0.95[EUR][1000 genomes] |
| rs285596 | 0.99[EUR][1000 genomes] |
| rs285597 | 1.00[EUR][1000 genomes] |
| rs287087 | 1.00[EUR][1000 genomes] |
| rs389166 | 0.80[AFR][1000 genomes] |
| rs392217 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832384 | chr12:41772648-41971430 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3337301 | chr12:41851654-42093677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv899040 | chr12:41905897-42181706 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:41925600-41949800 | Weak transcription | Stomach Smooth Muscle | stomach |
| 2 | chr12:41925800-41944800 | Weak transcription | Brain Germinal Matrix | brain |
| 3 | chr12:41928200-41928600 | Enhancers | Brain Cingulate Gyrus | brain |
