Variant report

Variant	rs28558310
Chromosome Location	chr5:145497511-145497512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145494896..145498767-chr5:145501979..145504223,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10043763	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883006	chr5:145450586-145672431	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv1796142	chr5:145484386-145505556	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv1827255	chr5:145484386-145505556	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145478200-145497600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:145478400-145497600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:145481200-145560200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:145481600-145498400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:145482200-145497600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:145482200-145497800	Weak transcription	Brain Germinal Matrix	brain
7	chr5:145482200-145500800	Weak transcription	Aorta	Aorta
8	chr5:145482400-145497800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:145482600-145501200	Weak transcription	Thymus	Thymus
10	chr5:145483000-145497600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:145483400-145498400	Weak transcription	Psoas Muscle	Psoas
12	chr5:145483400-145501200	Weak transcription	Esophagus	oesophagus
13	chr5:145485000-145505400	Weak transcription	Gastric	stomach
14	chr5:145489600-145497600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:145490400-145501200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:145490600-145497800	Weak transcription	Fetal Brain Male	brain
17	chr5:145490600-145501400	Weak transcription	Colonic Mucosa	Colon
18	chr5:145490600-145501800	Weak transcription	NHLF	lung
19	chr5:145490800-145535200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:145491000-145509800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:145491000-145510600	Strong transcription	HSMM	muscle
22	chr5:145491000-145517600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:145491000-145518800	Strong transcription	Dnd41	blood
24	chr5:145491000-145542200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:145491000-145551600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr5:145491000-145553800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:145491000-145560200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr5:145491200-145505200	Weak transcription	Ovary	ovary
29	chr5:145491200-145509800	Strong transcription	Fetal Muscle Trunk	muscle
30	chr5:145491200-145518000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr5:145491200-145534000	Strong transcription	Osteobl	bone
32	chr5:145491200-145552600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr5:145491200-145560200	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr5:145491200-145560200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr5:145491200-145560800	Weak transcription	Stomach Mucosa	stomach
36	chr5:145491400-145509400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr5:145491400-145510000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:145491400-145512400	Weak transcription	Right Ventricle	heart
39	chr5:145491400-145515400	Strong transcription	Liver	Liver
40	chr5:145491400-145516200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr5:145491400-145516600	Strong transcription	NH-A	brain
42	chr5:145491400-145560000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:145491400-145560400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:145491600-145505600	Weak transcription	Small Intestine	intestine
45	chr5:145491600-145509800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr5:145491600-145557000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:145491600-145559800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr5:145491800-145498400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:145491800-145503000	Strong transcription	Primary T cells from cord blood	blood
50	chr5:145491800-145503000	Strong transcription	Fetal Muscle Leg	muscle

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