Variant report

Variant	rs28559737
Chromosome Location	chr1:155205669-155205670
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:155205565-155205852	GM12878	blood:	n/a	n/a
2	POLR2A	chr1:155205640-155205674	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr1:155204367-155205693	PFSK-1	brain:	n/a	n/a
4	POLR2A	chr1:155205534-155206335	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr1:155202579-155206572	PFSK-1	brain:	n/a	n/a
6	POLR2A	chr1:155203364-155205718	HepG2	liver:	n/a	n/a
7	POLR2A	chr1:155204545-155205998	GM12892	blood:	n/a	n/a
8	POLR2A	chr1:155200644-155206138	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr1:155205219-155206151	K562	blood:	n/a	n/a
10	POLR2A	chr1:155204466-155205735	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr1:155204506-155205843	GM12891	blood:	n/a	n/a
12	POLR2A	chr1:155204429-155205998	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
GBA	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1409140	1.00[AMR][1000 genomes]
rs7367998	1.00[AMR][1000 genomes]
rs914616	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
3	nsv831614	chr1:155094978-155275031	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	434 gene(s)	inside rSNPs	diseases
4	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
5	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
6	nsv470741	chr1:155115260-155230131	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
7	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
8	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
9	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
10	nsv547963	chr1:155178746-155206167	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv870053	chr1:155180349-155212316	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
12	esv13606	chr1:155180489-155221243	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
13	esv2421617	chr1:155185951-155206167	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
14	nsv1008748	chr1:155189148-155230610	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
15	nsv1011773	chr1:155189148-155234821	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
16	esv1793876	chr1:155194112-155212255	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	75 gene(s)	inside rSNPs	diseases
17	nsv946412	chr1:155204296-155207961	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155197000-155205800	Weak transcription	Gastric	stomach
2	chr1:155197200-155212800	Weak transcription	Small Intestine	intestine
3	chr1:155198000-155205800	Weak transcription	Primary B cells from cord blood	blood
4	chr1:155198000-155205800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:155198000-155206800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:155198000-155209600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:155198000-155210400	Weak transcription	A549	lung
8	chr1:155198000-155210400	Weak transcription	HMEC	breast
9	chr1:155198000-155210400	Weak transcription	HSMM	muscle
10	chr1:155198000-155210600	Weak transcription	Psoas Muscle	Psoas
11	chr1:155198000-155210800	Weak transcription	Fetal Kidney	kidney
12	chr1:155198200-155205800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:155198200-155205800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:155198200-155205800	Weak transcription	Primary T cells from cord blood	blood
15	chr1:155198200-155205800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr1:155198200-155205800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr1:155198200-155205800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:155198200-155205800	Weak transcription	Right Ventricle	heart
19	chr1:155198200-155206000	Weak transcription	Brain Substantia Nigra	brain
20	chr1:155198200-155206000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr1:155198200-155206000	Weak transcription	Hela-S3	cervix
22	chr1:155198200-155206200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr1:155198200-155207800	Weak transcription	NHLF	lung
24	chr1:155198200-155209600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr1:155198200-155209600	Weak transcription	Fetal Brain Male	brain
26	chr1:155198200-155210400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:155198200-155210400	Weak transcription	Stomach Mucosa	stomach
28	chr1:155198200-155210400	Weak transcription	NHEK	skin
29	chr1:155198200-155210800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:155198200-155210800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:155198400-155205800	Weak transcription	Brain Hippocampus Middle	brain
32	chr1:155198600-155205800	Weak transcription	GM12878-XiMat	blood
33	chr1:155198600-155206000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:155198600-155206200	Weak transcription	Brain Germinal Matrix	brain
35	chr1:155201200-155210400	Weak transcription	HepG2	liver
36	chr1:155201400-155210400	Weak transcription	K562	blood
37	chr1:155201400-155210600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:155201600-155206000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr1:155201800-155210400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:155202200-155210400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:155202400-155206000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr1:155202600-155206000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr1:155202600-155210400	Weak transcription	Right Atrium	heart
44	chr1:155202800-155205800	Weak transcription	Fetal Muscle Leg	muscle
45	chr1:155202800-155206000	Weak transcription	Osteobl	bone
46	chr1:155202800-155206200	Weak transcription	HUVEC	blood vessel
47	chr1:155202800-155210200	Weak transcription	Fetal Lung	lung
48	chr1:155203000-155205800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr1:155203000-155206000	Weak transcription	NH-A	brain
50	chr1:155203800-155210400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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