Variant report

Variant	rs28559933
Chromosome Location	chr7:20785633-20785634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12669400	0.86[AFR][1000 genomes]
rs7789213	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529725	chr7:20773076-20993701	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:20782400-20788000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:20782800-20796200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:20784600-20785800	Enhancers	Fetal Kidney	kidney
4	chr7:20784800-20785800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:20784800-20785800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:20784800-20785800	Enhancers	Fetal Muscle Leg	muscle
7	chr7:20784800-20786000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:20785000-20785800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:20785200-20785800	Enhancers	Fetal Muscle Trunk	muscle
10	chr7:20785200-20786000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:20785400-20785800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:20785400-20786000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:20785400-20787200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:20785600-20785800	Enhancers	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links