Variant report

Variant	rs28561570
Chromosome Location	chr4:91876356-91876357
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10011972	1.00[EUR][1000 genomes]
rs10015653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10050020	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17017870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17017894	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17017898	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28533414	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28562515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6811194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7685222	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91871800-91879600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:91872000-91879600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:91872200-91878200	Weak transcription	Fetal Intestine Small	intestine
4	chr4:91872200-91879000	Weak transcription	Fetal Intestine Large	intestine
5	chr4:91872200-91885600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:91872600-91876400	Weak transcription	Fetal Kidney	kidney
7	chr4:91873200-91879000	Weak transcription	Hela-S3	cervix
8	chr4:91875800-91876600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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