Variant report

Variant	rs28565135
Chromosome Location	chr14:40500608-40500609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:40496039..40499019-chr14:40499728..40502198,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10129569	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10130863	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10141938	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10143709	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10144310	0.94[ASN][1000 genomes]
rs10144847	0.99[ASN][1000 genomes]
rs10483510	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11847855	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17110159	0.95[ASN][1000 genomes]
rs17110201	0.92[ASN][1000 genomes]
rs2070332	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2070333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2208194	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415575	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2415576	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391358	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs28393639	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28414089	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs28454363	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs28597700	0.94[ASN][1000 genomes]
rs28698314	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs28733862	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2899900	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41398248	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4605052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57755216	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs57769067	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs58615927	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs60194596	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60311477	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs60452480	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61166269	0.94[ASN][1000 genomes]
rs7141954	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7143493	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155384	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7160611	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7160758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160773	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs73287189	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs73289327	0.94[ASN][1000 genomes]
rs73289330	0.94[ASN][1000 genomes]
rs7492669	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8005055	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8013225	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9323012	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs995204	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530658	chr14:40214958-40734070	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2751272	chr14:40216880-40913230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv901661	chr14:40410765-40580535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2751273	chr14:40412795-40586449	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1043280	chr14:40416845-40590110	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2751274	chr14:40437649-40586449	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2751275	chr14:40437675-40608324	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1054430	chr14:40449227-40568841	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1045200	chr14:40449227-40614093	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv542049	chr14:40449227-40614093	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv564421	chr14:40467749-40572241	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv521372	chr14:40467749-40592380	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv517945	chr14:40486344-40501093	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv516104	chr14:40486897-40501093	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40499800-40501200	Weak transcription	Fetal Intestine Large	intestine

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