Variant report

Variant	rs28565355
Chromosome Location	chr18:13133545-13133546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13133544..13136413-chr18:13146335..13148164,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28402698	1.00[AMR][1000 genomes]
rs28406225	1.00[AMR][1000 genomes]
rs28439365	0.91[AFR][1000 genomes]
rs28515479	1.00[AMR][1000 genomes]
rs28707584	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7232003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8090328	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9949348	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9966256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062014	chr18:12687210-13183383	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv543655	chr18:12687210-13183383	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv1057083	chr18:12916779-13207538	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv576524	chr18:12918318-13183609	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1056593	chr18:12926314-13183383	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv1064364	chr18:12926314-13207686	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv833591	chr18:13093777-13253748	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv515878	chr18:13122618-13142415	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv817785	chr18:13130681-13133577	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13106800-13135400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:13118400-13135600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr18:13118400-13136200	Weak transcription	Psoas Muscle	Psoas
4	chr18:13118800-13136800	Weak transcription	HSMMtube	muscle
5	chr18:13119000-13134200	Weak transcription	Fetal Lung	lung
6	chr18:13119000-13136400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr18:13119200-13135800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr18:13119200-13136400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr18:13119400-13133600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr18:13119600-13135400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr18:13121200-13136400	Weak transcription	NHDF-Ad	bronchial
12	chr18:13121400-13134000	Weak transcription	HMEC	breast
13	chr18:13121400-13136600	Weak transcription	Brain Angular Gyrus	brain
14	chr18:13121600-13135800	Weak transcription	Fetal Brain Male	brain
15	chr18:13121600-13136000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr18:13121800-13134200	Weak transcription	HUVEC	blood vessel
17	chr18:13121800-13136400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr18:13122000-13136400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr18:13123800-13136400	Weak transcription	HSMM	muscle
20	chr18:13125600-13135800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr18:13126600-13135000	Weak transcription	Ovary	ovary
22	chr18:13127000-13135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr18:13127000-13136200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr18:13127000-13136200	Weak transcription	Placenta	Placenta
25	chr18:13127200-13135800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr18:13127200-13136200	Weak transcription	Brain Anterior Caudate	brain
27	chr18:13127400-13134200	Weak transcription	NHEK	skin
28	chr18:13127400-13135600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr18:13127400-13135800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr18:13127400-13135800	Weak transcription	GM12878-XiMat	blood
31	chr18:13127400-13136400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr18:13127600-13134800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr18:13127600-13135200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr18:13127600-13135400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr18:13127600-13135600	Weak transcription	Fetal Brain Female	brain
36	chr18:13127600-13135800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr18:13127600-13135800	Weak transcription	Left Ventricle	heart
38	chr18:13127600-13135800	Weak transcription	Thymus	Thymus
39	chr18:13127600-13136000	Weak transcription	Adipose Nuclei	Adipose
40	chr18:13127600-13136000	Weak transcription	Colonic Mucosa	Colon
41	chr18:13127600-13136000	Weak transcription	Gastric	stomach
42	chr18:13127600-13136200	Weak transcription	Esophagus	oesophagus
43	chr18:13127600-13136200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr18:13127600-13136400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr18:13127600-13136600	Weak transcription	Right Ventricle	heart
46	chr18:13127600-13136800	Weak transcription	Aorta	Aorta
47	chr18:13127800-13133800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr18:13127800-13135000	Weak transcription	Dnd41	blood
49	chr18:13127800-13135800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr18:13127800-13135800	Weak transcription	Brain Cingulate Gyrus	brain

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