Variant report

Variant	rs28566738
Chromosome Location	chr14:21317435-21317436
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:21286009..21288641-chr14:21315739..21317794,2	MCF-7	breast:
2	chr14:21316787..21319141-chr14:21320806..21323371,3	MCF-7	breast:
3	chr14:21303430..21306490-chr14:21314615..21319492,6	MCF-7	breast:
4	chr14:21149536..21151874-chr14:21316359..21319213,4	MCF-7	breast:
5	chr14:21309740..21312491-chr14:21315364..21317566,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7160116	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21314200-21318000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:21315000-21318000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:21315200-21317800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr14:21316000-21318000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:21316200-21317800	Enhancers	Stomach Mucosa	stomach
6	chr14:21316200-21318000	Enhancers	Brain Angular Gyrus	brain
7	chr14:21316400-21318000	Enhancers	Brain Substantia Nigra	brain
8	chr14:21316600-21317600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:21316600-21317600	Enhancers	Osteobl	bone
10	chr14:21316600-21317800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:21316600-21317800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:21316600-21317800	Enhancers	Brain Cingulate Gyrus	brain
13	chr14:21316600-21317800	Enhancers	Fetal Lung	lung
14	chr14:21316600-21318000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:21316600-21318000	Enhancers	Gastric	stomach
16	chr14:21316800-21317600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:21316800-21317600	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr14:21316800-21317800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr14:21316800-21317800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:21316800-21317800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:21316800-21317800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr14:21316800-21317800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr14:21316800-21317800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr14:21316800-21317800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr14:21316800-21317800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr14:21316800-21317800	Enhancers	Pancreas	Pancrea
27	chr14:21316800-21317800	Enhancers	HepG2	liver
28	chr14:21316800-21317800	Enhancers	HMEC	breast
29	chr14:21316800-21317800	Enhancers	K562	blood
30	chr14:21316800-21318000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr14:21316800-21318000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:21316800-21318000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr14:21316800-21318000	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr14:21316800-21318000	Enhancers	Brain Anterior Caudate	brain
35	chr14:21316800-21318000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:21317000-21317800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:21317000-21317800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:21317000-21317800	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr14:21317000-21318000	Enhancers	H9 Cell Line	embryonic stem cell
40	chr14:21317000-21318000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:21317200-21317600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:21317200-21317800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr14:21317200-21323800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:21317200-21325800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr14:21317400-21317600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr14:21317400-21317800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr14:21317400-21317800	Enhancers	Psoas Muscle	Psoas
48	chr14:21317400-21318000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr14:21317400-21318000	Flanking Active TSS	A549	lung
50	chr14:21317400-21321200	Weak transcription	Lung	lung

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