Variant report

Variant	rs28567909
Chromosome Location	chr11:104970541-104970542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11226598	0.83[AMR][1000 genomes]
rs45507492	1.00[AMR][1000 genomes]
rs45602234	0.83[AMR][1000 genomes]
rs55685308	0.83[AMR][1000 genomes]
rs571731	1.00[AMR][1000 genomes]
rs575938	1.00[AMR][1000 genomes]
rs58207132	1.00[AMR][1000 genomes]
rs59801167	1.00[AMR][1000 genomes]
rs61537972	0.83[AMR][1000 genomes]
rs61656179	1.00[AMR][1000 genomes]
rs7935149	1.00[AMR][1000 genomes]
rs7943897	1.00[AMR][1000 genomes]
rs7945199	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1042388	chr11:104934347-104988325	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
11	esv2756562	chr11:104937371-104981568	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
12	nsv1040275	chr11:104939029-104988325	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
13	nsv8871	chr11:104941750-104973508	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
14	nsv1054109	chr11:104948117-104976058	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
15	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv1049355	chr11:104950412-104972518	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
17	nsv442241	chr11:104950424-104972558	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
18	esv2762941	chr11:104952282-104972558	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
19	nsv524985	chr11:104960997-104991640	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
20	esv3425474	chr11:104962498-104978307	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104964400-104971600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:104969600-104970600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:104969600-104970600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr11:104969600-104972200	Enhancers	NHEK	skin
5	chr11:104969800-104970800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr11:104970000-104970800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:104970000-104971000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:104970000-104974200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:104970200-104970600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:104970200-104970800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:104970200-104970800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr11:104970200-104971400	Enhancers	Dnd41	blood
13	chr11:104970200-104972200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:104970200-104972200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr11:104970400-104970600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:104970400-104971600	Enhancers	HUVEC	blood vessel
17	chr11:104970400-104972200	Enhancers	Primary hematopoietic stem cells	blood
18	chr11:104970400-104972200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:104970400-104972400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:104970400-104972600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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