Variant report

Variant	rs28568465
Chromosome Location	chr4:131005648-131005649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10000982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10006202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10010185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10016700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2391597	0.94[AFR][1000 genomes]
rs28520920	0.88[AFR][1000 genomes]
rs28535770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28564286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28650063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28692908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28706401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28708791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28869839	0.83[AMR][1000 genomes]
rs6840432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9991723	0.83[AMR][1000 genomes]
rs9998028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027281	chr4:130962945-131005768	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1027051	chr4:130962945-131010834	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1019114	chr4:130962945-131013140	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv595414	chr4:130983055-131024471	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130999800-131007000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:131005200-131009800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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