Variant report

Variant	rs28568792
Chromosome Location	chr7:110778892-110778893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10216023	1.00[AMR][1000 genomes]
rs10223938	1.00[AMR][1000 genomes]
rs10232632	1.00[AMR][1000 genomes]
rs10232638	0.90[AFR][1000 genomes]
rs10234323	1.00[AFR][1000 genomes]
rs10239982	1.00[AFR][1000 genomes]
rs10242243	1.00[AFR][1000 genomes]
rs10242510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247851	1.00[AFR][1000 genomes]
rs10248799	1.00[AMR][1000 genomes]
rs10251218	1.00[AFR][1000 genomes]
rs10257658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262121	1.00[AMR][1000 genomes]
rs10263280	1.00[AFR][1000 genomes]
rs10266977	1.00[AMR][1000 genomes]
rs10276462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279604	0.90[AFR][1000 genomes]
rs13438044	1.00[AFR][1000 genomes]
rs13438736	1.00[AMR][1000 genomes]
rs28401368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28415597	1.00[AFR][1000 genomes]
rs28520723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28524030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535164	1.00[AFR][1000 genomes]
rs28729497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28890022	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6977318	1.00[AMR][1000 genomes]
rs7794359	1.00[AMR][1000 genomes]
rs7810421	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531434	chr7:110310931-110839892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3506497	chr7:110484691-111091738	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3506498	chr7:110484750-111091689	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2758129	chr7:110523298-110787849	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759554	chr7:110523298-110787849	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1031546	chr7:110549137-110978256	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv817555	chr7:110564801-110990927	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1033286	chr7:110588021-110990928	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv539063	chr7:110588021-110990928	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv931978	chr7:110607590-111092490	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1025987	chr7:110609568-111258501	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv1024477	chr7:110660006-110944477	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv608154	chr7:110688993-110945501	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv608155	chr7:110722482-111351512	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv1035119	chr7:110745019-111258501	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv1033647	chr7:110766750-110923436	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1016762	chr7:110769068-110883479	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1029168	chr7:110771561-110818458	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv888976	chr7:110773099-110959881	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv464674	chr7:110776037-110861883	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv608156	chr7:110776037-110861883	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:110776600-110779800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:110776800-110780000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr7:110777200-110779000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:110777400-110779200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:110777400-110780600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:110777600-110779000	Enhancers	Primary hematopoietic stem cells	blood
7	chr7:110777600-110779400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:110777600-110779400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:110777600-110779400	Enhancers	HUVEC	blood vessel
10	chr7:110777600-110779400	Enhancers	NHDF-Ad	bronchial
11	chr7:110777600-110780200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr7:110777600-110780600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:110777800-110779000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:110777800-110779000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr7:110777800-110779000	Enhancers	Primary B cells from peripheral blood	blood
16	chr7:110777800-110779000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr7:110777800-110779000	Enhancers	Adipose Nuclei	Adipose
18	chr7:110777800-110779000	Enhancers	Fetal Thymus	thymus
19	chr7:110777800-110779200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr7:110777800-110779200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:110777800-110779200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr7:110777800-110779400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:110777800-110779400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr7:110777800-110779400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr7:110777800-110780400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr7:110777800-110780400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr7:110777800-110780400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr7:110778000-110779000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:110778000-110779000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:110778000-110779000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:110778000-110779000	Enhancers	NH-A	brain
32	chr7:110778000-110779200	Enhancers	Primary B cells from cord blood	blood
33	chr7:110778000-110779200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:110778000-110779400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:110778000-110779400	Enhancers	Fetal Lung	lung
36	chr7:110778000-110779600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr7:110778000-110787400	Weak transcription	Aorta	Aorta
38	chr7:110778200-110780600	Enhancers	Colon Smooth Muscle	Colon
39	chr7:110778400-110779000	Enhancers	K562	blood
40	chr7:110778400-110779400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr7:110778400-110780400	Enhancers	Hela-S3	cervix
42	chr7:110778400-110784400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:110778600-110779400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:110778800-110779200	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr7:110778800-110779400	Enhancers	GM12878-XiMat	blood
46	chr7:110778800-110780400	Enhancers	Dnd41	blood
47	chr7:110778800-110780800	Enhancers	Primary T cells from cord blood	blood

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