Variant report

Variant	rs28569376
Chromosome Location	chr14:21176090-21176091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr14:21174951-21176185	HUVEC	blood vessel:	n/a	chr14:21175335-21175349
2	GATA3	chr14:21175683-21176335	MCF-7	breast:	n/a	n/a
3	GATA3	chr14:21175594-21176241	MCF-7	breast:	n/a	n/a
4	HDAC2	chr14:21175807-21176199	MCF-7	breast:	n/a	n/a
5	FOS	chr14:21175130-21176106	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr14:21175692-21176168	HUVEC	blood vessel:	n/a	n/a
7	ZNF217	chr14:21175785-21176189	MCF-7	breast:	n/a	n/a
8	ELF1	chr14:21175584-21176302	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:21175158..21177041-chr14:21248613..21250214,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258451	TF binding region
ENSG00000169413	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10133099	1.00[AMR][1000 genomes]
rs10142443	1.00[AMR][1000 genomes]
rs12434364	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1045004	chr14:21124345-21180397	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv541975	chr14:21124345-21180397	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21166400-21182800	Weak transcription	Brain Substantia Nigra	brain
2	chr14:21168000-21182200	Weak transcription	Pancreas	Pancrea
3	chr14:21168000-21194600	Weak transcription	Gastric	stomach
4	chr14:21172200-21176200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:21172200-21177000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr14:21174800-21176600	Enhancers	Placenta	Placenta
7	chr14:21174800-21176600	Enhancers	Stomach Mucosa	stomach
8	chr14:21175000-21176200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:21175000-21176200	Enhancers	HepG2	liver
10	chr14:21175000-21176800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:21175000-21176800	Enhancers	Fetal Lung	lung
12	chr14:21175200-21176200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:21175200-21176400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr14:21175400-21181200	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:21175600-21176200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr14:21175600-21176200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr14:21175800-21176200	Enhancers	Adipose Nuclei	Adipose
18	chr14:21175800-21176200	Enhancers	HUVEC	blood vessel
19	chr14:21175800-21176400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:21175800-21176600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:21176000-21176200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr14:21176000-21176200	Bivalent Enhancer	Osteobl	bone
23	chr14:21176000-21182800	Weak transcription	Duodenum Mucosa	Duodenum

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