Variant report

Variant	rs28570559
Chromosome Location	chr4:110280261-110280262
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10006960	1.00[AMR][1000 genomes]
rs28668659	1.00[AMR][1000 genomes]
rs28683638	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110278200-110282200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:110278400-110281600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:110278600-110281200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr4:110279000-110281200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr4:110279200-110281200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr4:110279400-110281000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr4:110279400-110281200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:110279400-110281200	Enhancers	Dnd41	blood
9	chr4:110279400-110281400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:110279400-110281400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr4:110279600-110281200	Enhancers	Primary hematopoietic stem cells	blood
12	chr4:110279600-110281200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr4:110279600-110281200	Enhancers	HUVEC	blood vessel
14	chr4:110279600-110281800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr4:110279600-110282200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:110279800-110280800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr4:110279800-110280800	Enhancers	Fetal Thymus	thymus
18	chr4:110279800-110281200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
19	chr4:110279800-110281200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:110280000-110280800	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr4:110280000-110280800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:110280000-110281000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:110280200-110280400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:110280200-110280600	Enhancers	Fetal Kidney	kidney

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