Variant report

Variant	rs28572115
Chromosome Location	chr14:25162162-25162163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25160085..25162899-chr14:25176597..25178827,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17257152	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17257159	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61976761	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901503	chr14:25133186-25172456	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25157400-25166800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr14:25157800-25164000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:25158000-25164000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:25159400-25166800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr14:25159600-25165000	Enhancers	Fetal Thymus	thymus
6	chr14:25159600-25170000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:25159800-25165400	Enhancers	GM12878-XiMat	blood
8	chr14:25159800-25166800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr14:25160600-25164200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr14:25160800-25164600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:25160800-25165400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr14:25160800-25165800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:25160800-25165800	Weak transcription	Fetal Kidney	kidney
14	chr14:25161200-25165400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr14:25161400-25162800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr14:25161400-25164400	Weak transcription	Small Intestine	intestine
17	chr14:25161800-25162800	Enhancers	K562	blood
18	chr14:25161800-25163200	Enhancers	Dnd41	blood
19	chr14:25162000-25162200	Enhancers	Left Ventricle	heart
20	chr14:25162000-25162200	Enhancers	Spleen	Spleen
21	chr14:25162000-25162400	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr14:25162000-25162800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr14:25162000-25163200	Enhancers	Fetal Muscle Trunk	muscle
24	chr14:25162000-25164800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:25162000-25165000	Enhancers	Fetal Muscle Leg	muscle
26	chr14:25162000-25165200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr14:25162000-25165400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:25162000-25166600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links