Variant report

Variant	rs285731
Chromosome Location	chr15:93226723-93226724
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93197470..93197983-chr15:93226402..93227309,2	MCF-7	breast:
2	chr15:93186486..93189076-chr15:93224544..93226997,2	MCF-7	breast:
3	chr15:93064521..93065401-chr15:93226401..93227344,5	MCF-7	breast:
4	chr15:93197096..93198076-chr15:93225951..93227103,4	MCF-7	breast:
5	chr15:93179649..93182992-chr15:93225341..93228473,3	MCF-7	breast:
6	chr15:93154999..93156253-chr15:93226369..93227380,11	MCF-7	breast:
7	chr15:93065601..93066325-chr15:93226419..93227349,3	MCF-7	breast:
8	chr15:93156412..93156959-chr15:93226412..93227365,2	MCF-7	breast:
9	chr15:93222087..93224907-chr15:93225321..93227678,2	MCF-7	breast:
10	chr15:93226419..93227336-chr15:93257734..93258779,3	MCF-7	breast:
11	chr15:93153824..93155691-chr15:93224962..93227625,2	MCF-7	breast:
12	chr15:93154912..93156226-chr15:93226491..93227413,5	MCF-7	breast:
13	chr15:93064493..93065462-chr15:93226412..93227313,4	K562	blood:
14	chr15:93174620..93175415-chr15:93226486..93227364,2	MCF-7	breast:
15	chr15:93186791..93189169-chr15:93226083..93228824,3	MCF-7	breast:
16	chr15:93224785..93226821-chr15:93245528..93247882,2	MCF-7	breast:
17	chr15:93064747..93065909-chr15:93226356..93227224,4	MCF-7	breast:
18	chr15:93198078..93199856-chr15:93225325..93228145,2	MCF-7	breast:
19	chr15:93180560..93183388-chr15:93224923..93226823,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10520713	0.82[CHB][hapmap]
rs206351	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28522798	0.93[EUR][1000 genomes]
rs285729	0.89[CHB][hapmap];0.81[CHD][hapmap];0.91[MEX][hapmap]
rs285736	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs381247	0.86[EUR][1000 genomes]
rs442430	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1036897	chr15:93211991-93239388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs285731	FAM174B	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93214800-93232200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93224000-93226800	Enhancers	HSMM	muscle
3	chr15:93224200-93226800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:93224200-93226800	Enhancers	Fetal Stomach	stomach
5	chr15:93224400-93226800	Enhancers	Fetal Muscle Leg	muscle
6	chr15:93224400-93227200	Enhancers	Fetal Lung	lung
7	chr15:93224800-93227000	Enhancers	Fetal Muscle Trunk	muscle
8	chr15:93225000-93227000	Enhancers	NHDF-Ad	bronchial
9	chr15:93225000-93231800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:93225000-93232000	Weak transcription	Ovary	ovary
11	chr15:93225800-93226800	Enhancers	Placenta	Placenta
12	chr15:93226000-93234000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:93226200-93226800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr15:93226200-93226800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:93226200-93226800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr15:93226200-93226800	Enhancers	Left Ventricle	heart
17	chr15:93226200-93226800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr15:93226400-93226800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr15:93226400-93226800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr15:93226400-93226800	Enhancers	Gastric	stomach
21	chr15:93226400-93226800	Enhancers	Right Ventricle	heart
22	chr15:93226400-93226800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr15:93226400-93226800	Enhancers	Stomach Mucosa	stomach
24	chr15:93226600-93230600	Weak transcription	HSMMtube	muscle

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