Variant report

Variant	rs28574824
Chromosome Location	chr14:47096955-47096956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10129937	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10131415	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10134490	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10142659	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10147543	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10150933	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10162317	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10162470	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10162586	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10162594	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10162595	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11622854	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11627479	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13379084	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1381637	0.83[AMR][1000 genomes]
rs1381640	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1462393	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17674427	0.82[EUR][1000 genomes]
rs17743255	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1870884	0.83[AMR][1000 genomes]
rs1903680	0.83[AMR][1000 genomes]
rs1947723	0.83[AMR][1000 genomes]
rs28495536	0.89[AMR][1000 genomes]
rs28610560	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28710205	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28728204	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28805289	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28808418	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28883026	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2924078	0.81[AMR][1000 genomes]
rs360175	0.83[AMR][1000 genomes]
rs360177	0.82[AMR][1000 genomes]
rs360186	0.84[AMR][1000 genomes]
rs360188	0.84[AMR][1000 genomes]
rs435579	0.89[AMR][1000 genomes]
rs4900707	0.83[AMR][1000 genomes]
rs6572386	0.81[AMR][1000 genomes]
rs7156338	0.88[AMR][1000 genomes]
rs7156844	0.82[AMR][1000 genomes]
rs8014571	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9806013	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9806088	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751278	chr14:46718250-47225891	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv901863	chr14:46797353-47247399	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2829996	chr14:46799990-47344432	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv901870	chr14:46825242-47125523	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1040847	chr14:46905206-47869359	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv542085	chr14:46905206-47869359	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv542086	chr14:46905406-47662394	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1049865	chr14:46905406-47869220	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv542087	chr14:46905406-47869220	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1046083	chr14:47073750-47110060	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv517764	chr14:47083005-47419867	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:47096400-47100000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:47096600-47108800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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