Variant report

Variant	rs28575047
Chromosome Location	chr17:15088802-15088803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15082522..15085465-chr17:15085640..15089593,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs28418368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28522664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28590369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28658548	1.00[EUR][1000 genomes]
rs28665441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7223778	1.00[EUR][1000 genomes]
rs8070178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8078445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9892849	1.00[EUR][1000 genomes]
rs9895080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9899103	1.00[AMR][1000 genomes]
rs9901718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9902170	1.00[EUR][1000 genomes]
rs9908239	1.00[AMR][1000 genomes]
rs9909980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9912998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9916251	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1990	chr17:15041267-15094044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15087400-15089200	Enhancers	K562	blood
2	chr17:15088000-15090400	Enhancers	Fetal Muscle Leg	muscle
3	chr17:15088000-15090600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr17:15088200-15089800	Enhancers	Ovary	ovary
5	chr17:15088200-15090000	Enhancers	HSMMtube	muscle
6	chr17:15088200-15090800	Enhancers	Adipose Nuclei	Adipose
7	chr17:15088400-15089000	Enhancers	Pancreas	Pancrea
8	chr17:15088400-15089000	Enhancers	HSMM	muscle
9	chr17:15088400-15089200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr17:15088400-15089200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr17:15088400-15089800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr17:15088400-15090200	Enhancers	Psoas Muscle	Psoas
13	chr17:15088400-15090400	Enhancers	Fetal Lung	lung
14	chr17:15088400-15090600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr17:15088400-15090800	Enhancers	NHDF-Ad	bronchial
16	chr17:15088600-15089000	Enhancers	Right Ventricle	heart
17	chr17:15088600-15089200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr17:15088600-15089200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr17:15088600-15089200	Enhancers	Left Ventricle	heart
20	chr17:15088600-15089200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr17:15088600-15089800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr17:15088600-15090000	Enhancers	Right Atrium	heart
23	chr17:15088600-15090400	Enhancers	Fetal Heart	heart
24	chr17:15088600-15090400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr17:15088800-15089000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr17:15088800-15089000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
27	chr17:15088800-15089000	Bivalent Enhancer	Liver	Liver
28	chr17:15088800-15089000	Flanking Active TSS	Osteobl	bone
29	chr17:15088800-15089200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr17:15088800-15089200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr17:15088800-15089400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr17:15088800-15089400	Enhancers	Fetal Brain Male	brain
33	chr17:15088800-15089800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr17:15088800-15089800	Weak transcription	Placenta	Placenta

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