Variant report

Variant	rs2857570
Chromosome Location	chr7:19152295-19152296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538767	chr7:19150355-19163170	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1028132	chr7:19150355-19172107	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv538768	chr7:19150355-19172107	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538769	chr7:19150920-19160604	Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv538770	chr7:19151576-19159136	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a
9	nsv538771	chr7:19151576-19162140	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
10	nsv538772	chr7:19152061-19159275	Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19148200-19154800	Weak transcription	HSMMtube	muscle
2	chr7:19148400-19155600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:19148600-19152600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:19150800-19153200	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr7:19150800-19157200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:19151200-19153000	Flanking Active TSS	Osteobl	bone
7	chr7:19151400-19155200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:19151600-19152400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
9	chr7:19151600-19152600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chr7:19151600-19152600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:19151600-19152600	Active TSS	Aorta	Aorta
12	chr7:19151600-19152800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr7:19151600-19153400	Strong transcription	HSMM	muscle
14	chr7:19151800-19152600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:19151800-19152800	Active TSS	Right Atrium	heart
16	chr7:19151800-19153000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:19151800-19158800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:19152000-19152400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
19	chr7:19152000-19152400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:19152000-19152400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr7:19152000-19152400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:19152000-19152400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
23	chr7:19152000-19152400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:19152000-19152400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
25	chr7:19152000-19152400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
26	chr7:19152000-19152400	Bivalent/Poised TSS	Left Ventricle	heart
27	chr7:19152000-19152400	Active TSS	Right Ventricle	heart
28	chr7:19152000-19152400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
29	chr7:19152000-19152400	Bivalent Enhancer	Spleen	Spleen
30	chr7:19152000-19152600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
31	chr7:19152000-19152600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
32	chr7:19152000-19152600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:19152000-19152800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
34	chr7:19152200-19152400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr7:19152200-19152400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr7:19152200-19152400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:19152200-19152400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:19152200-19152400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:19152200-19152400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
40	chr7:19152200-19152400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:19152200-19152400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:19152200-19152400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr7:19152200-19152400	Bivalent Enhancer	Fetal Heart	heart
44	chr7:19152200-19152400	Bivalent Enhancer	Fetal Lung	lung
45	chr7:19152200-19152400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
46	chr7:19152200-19152400	Transcr. at gene 5' and 3'	Placenta	Placenta
47	chr7:19152200-19152400	Bivalent Enhancer	Fetal Stomach	stomach
48	chr7:19152200-19152400	Bivalent Enhancer	Gastric	stomach
49	chr7:19152200-19152400	Bivalent Enhancer	Lung	lung
50	chr7:19152200-19152400	Bivalent Enhancer	Psoas Muscle	Psoas

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